import_deepToolsMat

Argument	Description
object	A profileplyr object
con	Connection to write/read deeptools data to/from.

Example

The matrix below is an output of the ‘computeMatrix’ function within the deepTools package.

library(profileplyr)

proplyr_object <- import_deepToolsMat(con = "./compute_matrix_HUES64")
proplyr_object

## class: profileplyr 
## dim: 1000 100 
## metadata(0):
## assays(10): E016_WGBS_FractionalMethylation
##   E016-H3K27ac.pval.signal ... E013-H3K4me1.pval.signal
##   E013-H3K4me3.pval.signal
## rownames: NULL
## rowData names(3): names score dpGroup
## colnames: NULL
## colData names(0):

This is now a profilplyr object and can be manipulated or visualized within R using the other profileplyr functions. If it is preferred to visualize using deepTOols after manipulation and grouping, the object can always be exported using the ‘export_deepToolsMat’ function.

import_deepToolsMat

Doug Barrows

8/13/2019

Example

The matrix below is an output of the ‘computeMatrix’ function within the deepTools package.

This is now a profilplyr object and can be manipulated or visualized within R using the other profileplyr functions. If it is preferred to visualize using deepTOols after manipulation and grouping, the object can always be exported using the ‘export_deepToolsMat’ function.